=> Bootstrap dependency digest>=20010302: found digest-20121220
===> Skipping vulnerability checks.
WARNING: No /var/db/pkg/pkg-vulnerabilities file found.
WARNING: To fix run: `/usr/sbin/pkg_admin -K /var/db/pkg fetch-pkg-vulnerabilities'.
===> Building for plinkseq-0.08
--- all ---
/usr/bin/make  all-recursive
--- all-recursive ---
Making all in lib
--- libplinkseq_la-eval.lo ---
--- libplinkseq_la-token.lo ---
--- libplinkseq_la-eval.lo ---
/bin/sh ../libtool --tag=CXX   --mode=compile c++ -DHAVE_CONFIG_H -I. -I..   -I/usr/pkg/include  -O2 -I/usr/pkg/include -MT libplinkseq_la-eval.lo -MD -MP -MF .deps/libplinkseq_la-eval.Tpo -c -o libplinkseq_la-eval.lo `test -f 'eval.cpp' || echo './'`eval.cpp
--- libplinkseq_la-token.lo ---
/bin/sh ../libtool --tag=CXX   --mode=compile c++ -DHAVE_CONFIG_H -I. -I..   -I/usr/pkg/include  -O2 -I/usr/pkg/include -MT libplinkseq_la-token.lo -MD -MP -MF .deps/libplinkseq_la-token.Tpo -c -o libplinkseq_la-token.lo `test -f 'token.cpp' || echo './'`token.cpp
libtool: compile:  c++ -DHAVE_CONFIG_H -I. -I.. -I/scratch/biology/plinkseq/work/.buildlink/include -O2 -MT libplinkseq_la-token.lo -MD -MP -MF .deps/libplinkseq_la-token.Tpo -c token.cpp  -fPIC -DPIC -o .libs/libplinkseq_la-token.o
--- libplinkseq_la-eval.lo ---
libtool: compile:  c++ -DHAVE_CONFIG_H -I. -I.. -I/scratch/biology/plinkseq/work/.buildlink/include -O2 -MT libplinkseq_la-eval.lo -MD -MP -MF .deps/libplinkseq_la-eval.Tpo -c eval.cpp  -fPIC -DPIC -o .libs/libplinkseq_la-eval.o
In file included from eval.cpp:8:
In file included from ./eval.h:4:
In file included from ./token.h:4:
In file included from ./variant.h:14:
In file included from ./genotype.h:11:
In file included from ./individual.h:8:
In file included from ./meta.h:13:
./helper.h:730:3: warning: control reaches end of non-void function [-Wreturn-type]
  }
  ^
In file included from eval.cpp:8:
In file included from ./eval.h:4:
In file included from ./token.h:4:
In file included from ./variant.h:14:
In file included from ./genotype.h:11:
In file included from ./individual.h:8:
./meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch]
                    switch( m->mt ) 
                            ^
./meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch]
                switch( m->mt )
                        ^
--- libplinkseq_la-token.lo ---
In file included from token.cpp:2:
In file included from ./token.h:4:
In file included from ./variant.h:14:
In file included from ./genotype.h:11:
In file included from ./individual.h:8:
In file included from ./meta.h:13:
./helper.h:730:3: warning: control reaches end of non-void function [-Wreturn-type]
  }
  ^
--- libplinkseq_la-eval.lo ---
In file included from eval.cpp:8:
--- libplinkseq_la-token.lo ---
In file included from token.cpp:2:
--- libplinkseq_la-eval.lo ---
In file included from ./eval.h:4:
--- libplinkseq_la-token.lo ---
In file included from ./token.h:4:
--- libplinkseq_la-eval.lo ---
In file included from ./token.h:4:
--- libplinkseq_la-token.lo ---
In file included from ./variant.h:14:
--- libplinkseq_la-eval.lo ---
In file included from ./variant.h:22:
--- libplinkseq_la-token.lo ---
In file included from ./genotype.h:11:
--- libplinkseq_la-eval.lo ---
In file included from ./svar.h:6:
--- libplinkseq_la-token.lo ---
In file included from ./individual.h:8:
--- libplinkseq_la-eval.lo ---
./variant.pb.h:17:2: error: This file was generated by an older version of protoc which is
--- libplinkseq_la-token.lo ---
./meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch]
--- libplinkseq_la-eval.lo ---
#error This file was generated by an older version of protoc which is
--- libplinkseq_la-token.lo ---
                    switch( m->mt ) 
--- libplinkseq_la-eval.lo ---
 ^
--- libplinkseq_la-token.lo ---
                            ^
--- libplinkseq_la-eval.lo ---
./variant.pb.h:18:2: error: incompatible with your Protocol Buffer headers.  Please
--- libplinkseq_la-token.lo ---
./meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch]
--- libplinkseq_la-eval.lo ---
#error incompatible with your Protocol Buffer headers.  Please
--- libplinkseq_la-token.lo ---
                switch( m->mt )
--- libplinkseq_la-eval.lo ---
 ^
--- libplinkseq_la-token.lo ---
                        ^
In file included from token.cpp:2:
--- libplinkseq_la-eval.lo ---
./variant.pb.h:19:2: error: regenerate this file with a newer version of protoc.
#error regenerate this file with a newer version of protoc.
--- libplinkseq_la-token.lo ---
In file included from ./token.h:4:
--- libplinkseq_la-eval.lo ---
 ^
eval.cpp:304:10: warning: 12 enumeration values not handled in switch: 'UNDEF', 'INT', 'FLOAT'... [-Wswitch]
  switch(t) 
         ^
eval.cpp:342:10: warning: 19 enumeration values not handled in switch: 'UNDEF', 'INT', 'FLOAT'... [-Wswitch]
  switch(t)    
         ^
eval.cpp:365:11: warning: 14 enumeration values not handled in switch: 'UNDEF', 'INT', 'FLOAT'... [-Wswitch]
  switch( t )  
          ^
--- libplinkseq_la-token.lo ---
In file included from ./variant.h:22:
In file included from ./svar.h:6:
./variant.pb.h:17:2: error: This file was generated by an older version of protoc which is
#error This file was generated by an older version of protoc which is
 ^
./variant.pb.h:18:2: error: incompatible with your Protocol Buffer headers.  Please
#error incompatible with your Protocol Buffer headers.  Please
 ^
./variant.pb.h:19:2: error: regenerate this file with a newer version of protoc.
#error regenerate this file with a newer version of protoc.
 ^
--- libplinkseq_la-eval.lo ---
6 warnings and 3 errors generated.
*** [libplinkseq_la-eval.lo] Error code 1

make: stopped in /scratch/biology/plinkseq/work/plinkseq-0.08/lib
--- libplinkseq_la-token.lo ---
token.cpp:1797:11: warning: 16 enumeration values not handled in switch: 'UNDEF', 'INT', 'FLOAT'... [-Wswitch]
  switch( ttype )
          ^
token.cpp:1821:12: warning: 27 enumeration values not handled in switch: 'UNDEF', 'STRING', 'INT_VECTOR'... [-Wswitch]
  switch ( ttype ) 
           ^
token.cpp:1839:12: warning: 27 enumeration values not handled in switch: 'UNDEF', 'STRING', 'INT_VECTOR'... [-Wswitch]
  switch ( ttype ) 
           ^
token.cpp:2044:12: warning: 27 enumeration values not handled in switch: 'UNDEF', 'STRING', 'INT_VECTOR'... [-Wswitch]
  switch ( ttype ) 
           ^
token.cpp:2087:12: warning: 27 enumeration values not handled in switch: 'UNDEF', 'STRING', 'INT_VECTOR'... [-Wswitch]
  switch ( ttype ) 
           ^
8 warnings and 3 errors generated.
*** [libplinkseq_la-token.lo] Error code 1

make: stopped in /scratch/biology/plinkseq/work/plinkseq-0.08/lib
2 errors

make: stopped in /scratch/biology/plinkseq/work/plinkseq-0.08/lib
*** [all-recursive] Error code 1

make: stopped in /scratch/biology/plinkseq/work/plinkseq-0.08
1 error

make: stopped in /scratch/biology/plinkseq/work/plinkseq-0.08
*** [all] Error code 2

make: stopped in /scratch/biology/plinkseq/work/plinkseq-0.08
1 error

make: stopped in /scratch/biology/plinkseq/work/plinkseq-0.08
*** Error code 2

Stop.
make: stopped in /bulk-data/pkgsrc/biology/plinkseq
*** Error code 1

Stop.
make: stopped in /bulk-data/pkgsrc/biology/plinkseq
