=> Bootstrap dependency digest>=20010302: found digest-20111104
WARNING: [license.mk] Every package should define a LICENSE.
===> Skipping vulnerability checks.
WARNING: No /var/db/pkg/pkg-vulnerabilities file found.
WARNING: To fix run: `/usr/sbin/pkg_admin -K /var/db/pkg fetch-pkg-vulnerabilities'.
===> Building for py27-mol-1.4.1nb3
(cd /scratch/biology/py-mol/work/pymol/ && /usr/bin/env USETOOLS=no PTHREAD_CFLAGS=\ -pthread\  PTHREAD_LDFLAGS=\ -pthread PTHREAD_LIBS= PTHREADBASE=/usr DL_CFLAGS=\ -pthread\  DL_LDFLAGS=\ -pthread DL_LIBS= PYTHON=/usr/pkg/bin/python2.7 CC=gcc CFLAGS=-O2\ -I/usr/include\ -I/usr/pkg/include/freetype2\ -I/usr/pkg/include CPPFLAGS=-I/usr/include\ -I/usr/pkg/include/freetype2\ -I/usr/pkg/include CXX=c++ CXXFLAGS=-O2\ -I/usr/include\ -I/usr/pkg/include/freetype2\ -I/usr/pkg/include COMPILER_RPATH_FLAG=-Wl,-rpath, F77=g77 FC=g77 FFLAGS=-O LANG=C LC_COLLATE=C LC_CTYPE=C LC_MESSAGES=C LC_MONETARY=C LC_NUMERIC=C LC_TIME=C LDFLAGS=-L/usr/lib\ -Wl,-rpath,/usr/lib\ -L/usr/pkg/lib\ -Wl,-rpath,/usr/pkg/lib LINKER_RPATH_FLAG=-rpath PATH=/scratch/biology/py-mol/work/.wrapper/bin:/scratch/biology/py-mol/work/.buildlink/bin:/scratch/biology/py-mol/work/.tools/bin:/usr/pkg/bin:/usr/bin:/bin:/usr/pkg/bin:/usr/local/bin:/usr/pkg/bin:/usr/pkg/bin PREFIX=/usr/pkg PKG_SYSCONFDIR=/usr/pkg/etc HOME=/scratch/biology/py-mol/work/.home CPP=cpp LINK_ALL_LIBGCC_HACK= LOCALBASE=/usr/pkg NO_WHOLE_ARCHIVE_FLAG=-Wl,--no-whole-archive WHOLE_ARCHIVE_FLAG=-Wl,--whole-archive X11BASE=/usr/pkg X11PREFIX=/usr/pkg PKGMANDIR=man PKGINFODIR=info PKGGNUDIR=gnu/ MAKECONF=/dev/null OBJECT_FMT=ELF USETOOLS=no BSD_INSTALL_PROGRAM=/usr/bin/install\ -c\ -s\ -o\ pbulkXXX\ -g\ users\ -m\ 755 BSD_INSTALL_SCRIPT=/usr/bin/install\ -c\ -o\ pbulkXXX\ -g\ users\ -m\ 755 BSD_INSTALL_LIB=/usr/bin/install\ -c\ -o\ pbulkXXX\ -g\ users\ -m\ 755 BSD_INSTALL_DATA=/usr/bin/install\ -c\ -o\ pbulkXXX\ -g\ users\ -m\ 644 BSD_INSTALL_MAN=/usr/bin/install\ -c\ -o\ pbulkXXX\ -g\ users\ -m\ 644 BSD_INSTALL=/usr/bin/install BSD_INSTALL_PROGRAM_DIR=/usr/bin/install\ -d\ -o\ pbulkXXX\ -g\ users\ -m\ 755 BSD_INSTALL_SCRIPT_DIR=/usr/bin/install\ -d\ -o\ pbulkXXX\ -g\ users\ -m\ 755 BSD_INSTALL_LIB_DIR=/usr/bin/install\ -d\ -o\ pbulkXXX\ -g\ users\ -m\ 755 BSD_INSTALL_DATA_DIR=/usr/bin/install\ -d\ -o\ pbulkXXX\ -g\ users\ -m\ 755 BSD_INSTALL_MAN_DIR=/usr/bin/install\ -d\ -o\ pbulkXXX\ -g\ users\ -m\ 755 BSD_INSTALL_GAME=/usr/bin/install\ -c\ -s\ -o\ pbulkXXX\ -g\ users\ -m\ 2555 BSD_INSTALL_GAME_DATA=/usr/bin/install\ -c\ -o\ pbulkXXX\ -g\ users\ -m\ 664 BSD_INSTALL_GAME_DIR=/usr/bin/install\ -d\ -o\ pbulkXXX\ -g\ users\ -m\ 775 INSTALL_INFO= MAKEINFO=/scratch/biology/py-mol/work/.tools/bin/makeinfo FLEX= BISON= PKG_CONFIG= PKG_CONFIG_LIBDIR=/scratch/biology/py-mol/work/.buildlink/lib/pkgconfig:/scratch/biology/py-mol/work/.buildlink/share/pkgconfig PKG_CONFIG_LOG=/scratch/biology/py-mol/work/.pkg-config.log PKG_CONFIG_PATH= NOGCCERROR=yes WRAPPER_DEBUG=no WRAPPER_UPDATE_CACHE=yes VIEWBASE=/usr/pkg /usr/pkg/bin/python2.7  setup.py  build )
running build
running build_py
creating build
creating build/lib.netbsd-6.99.15-amd64-2.7
creating build/lib.netbsd-6.99.15-amd64-2.7/chempy
copying modules/chempy/protein_amber99.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy
copying modules/chempy/gamess1.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy
copying modules/chempy/arc.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy
copying modules/chempy/mol.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy
copying modules/chempy/charge.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy
copying modules/chempy/models.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy
copying modules/chempy/xyz.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy
copying modules/chempy/protein_mmff.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy
copying modules/chempy/gms.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy
copying modules/chempy/sdf.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy
copying modules/chempy/map.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy
copying modules/chempy/protein_residues.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy
copying modules/chempy/lst.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy
copying modules/chempy/brick.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy
copying modules/chempy/bond_amber.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy
copying modules/chempy/bond_mmff.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy
copying modules/chempy/place.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy
copying modules/chempy/cex.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy
copying modules/chempy/io.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy
copying modules/chempy/water_residues.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy
copying modules/chempy/water_amber.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy
copying modules/chempy/pdb.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy
copying modules/chempy/mae.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy
copying modules/chempy/protein_amber.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy
copying modules/chempy/cc1.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy
copying modules/chempy/dictdb.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy
copying modules/chempy/mmd.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy
copying modules/chempy/cif.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy
copying modules/chempy/neighbor.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy
copying modules/chempy/__init__.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy
copying modules/chempy/bonds.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy
copying modules/chempy/mass.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy
copying modules/chempy/solvate.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy
copying modules/chempy/protein.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy
copying modules/chempy/cpv.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy
copying modules/chempy/hetatm.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy
copying modules/chempy/pkl.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy
copying modules/chempy/mol2.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy
creating build/lib.netbsd-6.99.15-amd64-2.7/chempy/bmin
copying modules/chempy/bmin/commands.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy/bmin
copying modules/chempy/bmin/util.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy/bmin
copying modules/chempy/bmin/realtime.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy/bmin
copying modules/chempy/bmin/__init__.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy/bmin
copying modules/chempy/bmin/state.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy/bmin
creating build/lib.netbsd-6.99.15-amd64-2.7/chempy/champ
copying modules/chempy/champ/formal_charges.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy/champ
copying modules/chempy/champ/assign.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy/champ
copying modules/chempy/champ/amber99.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy/champ
copying modules/chempy/champ/__init__.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy/champ
creating build/lib.netbsd-6.99.15-amd64-2.7/chempy/fast
copying modules/chempy/fast/__init__.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy/fast
creating build/lib.netbsd-6.99.15-amd64-2.7/chempy/fragments
copying modules/chempy/fragments/__init__.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy/fragments
creating build/lib.netbsd-6.99.15-amd64-2.7/chempy/tinker
copying modules/chempy/tinker/keyword.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy/tinker
copying modules/chempy/tinker/amber.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy/tinker
copying modules/chempy/tinker/realtime.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy/tinker
copying modules/chempy/tinker/__init__.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy/tinker
copying modules/chempy/tinker/state.py -> build/lib.netbsd-6.99.15-amd64-2.7/chempy/tinker
creating build/lib.netbsd-6.99.15-amd64-2.7/pmg_tk
copying modules/pmg_tk/ColorEditor.py -> build/lib.netbsd-6.99.15-amd64-2.7/pmg_tk
copying modules/pmg_tk/Demo.py -> build/lib.netbsd-6.99.15-amd64-2.7/pmg_tk
copying modules/pmg_tk/PMGApp.py -> build/lib.netbsd-6.99.15-amd64-2.7/pmg_tk
copying modules/pmg_tk/__init__.py -> build/lib.netbsd-6.99.15-amd64-2.7/pmg_tk
copying modules/pmg_tk/SetEditor.py -> build/lib.netbsd-6.99.15-amd64-2.7/pmg_tk
copying modules/pmg_tk/Setting.py -> build/lib.netbsd-6.99.15-amd64-2.7/pmg_tk
creating build/lib.netbsd-6.99.15-amd64-2.7/pmg_tk/startup
copying modules/pmg_tk/startup/remote_pdb_load.py -> build/lib.netbsd-6.99.15-amd64-2.7/pmg_tk/startup
copying modules/pmg_tk/startup/apbs_tools.py -> build/lib.netbsd-6.99.15-amd64-2.7/pmg_tk/startup
copying modules/pmg_tk/startup/__init__.py -> build/lib.netbsd-6.99.15-amd64-2.7/pmg_tk/startup
creating build/lib.netbsd-6.99.15-amd64-2.7/pmg_tk/skins
copying modules/pmg_tk/skins/__init__.py -> build/lib.netbsd-6.99.15-amd64-2.7/pmg_tk/skins
creating build/lib.netbsd-6.99.15-amd64-2.7/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/builder.py -> build/lib.netbsd-6.99.15-amd64-2.7/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/hist.py -> build/lib.netbsd-6.99.15-amd64-2.7/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/SimpleColorChooser.py -> build/lib.netbsd-6.99.15-amd64-2.7/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/ColorMap.py -> build/lib.netbsd-6.99.15-amd64-2.7/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/ModalWindow.py -> build/lib.netbsd-6.99.15-amd64-2.7/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/ColorRampModel.py -> build/lib.netbsd-6.99.15-amd64-2.7/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/volume.py -> build/lib.netbsd-6.99.15-amd64-2.7/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/__init__.py -> build/lib.netbsd-6.99.15-amd64-2.7/pmg_tk/skins/normal
creating build/lib.netbsd-6.99.15-amd64-2.7/pmg_wx
copying modules/pmg_wx/__init__.py -> build/lib.netbsd-6.99.15-amd64-2.7/pmg_wx
creating build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/monitoring.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/querying.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/importing.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/preset.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/editor.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/wizarding.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/xwin.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/fitting.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/helping.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/internal.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/constants.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/keyboard.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/vfont.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/gui.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/api.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/controlling.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/parser.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/callback.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/selecting.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/rpc.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/cgo.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/cmd.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/commanding.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/creating.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/keywords.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/util.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/xray.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/selector.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/m4x.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/povray.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/parsing.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/experimenting.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/checking.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/movie.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/editing.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/locking.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/completing.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/externing.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/invocation.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/setting.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/__init__.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/headering.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/moving.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/exporting.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/colorramping.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/feedingback.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/menu.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/computing.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/viewing.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
copying modules/pymol/shortcut.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol
creating build/lib.netbsd-6.99.15-amd64-2.7/pymol/contrib
copying modules/pymol/contrib/__init__.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol/contrib
creating build/lib.netbsd-6.99.15-amd64-2.7/pymol/opengl
copying modules/pymol/opengl/__init__.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol/opengl
creating build/lib.netbsd-6.99.15-amd64-2.7/pymol/opengl/gl
copying modules/pymol/opengl/gl/glconst.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol/opengl/gl
copying modules/pymol/opengl/gl/__init__.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol/opengl/gl
creating build/lib.netbsd-6.99.15-amd64-2.7/pymol/opengl/glu
copying modules/pymol/opengl/glu/gluconst.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol/opengl/glu
copying modules/pymol/opengl/glu/__init__.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol/opengl/glu
creating build/lib.netbsd-6.99.15-amd64-2.7/pymol/opengl/glut
copying modules/pymol/opengl/glut/glutconst.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol/opengl/glut
copying modules/pymol/opengl/glut/__init__.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol/opengl/glut
creating build/lib.netbsd-6.99.15-amd64-2.7/pymol/wizard
copying modules/pymol/wizard/benchmark.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol/wizard
copying modules/pymol/wizard/label.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol/wizard
copying modules/pymol/wizard/box.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol/wizard
copying modules/pymol/wizard/stereodemo.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol/wizard
copying modules/pymol/wizard/renaming.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol/wizard
copying modules/pymol/wizard/charge.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol/wizard
copying modules/pymol/wizard/annotation.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol/wizard
copying modules/pymol/wizard/pair_fit.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol/wizard
copying modules/pymol/wizard/fedora.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol/wizard
copying modules/pymol/wizard/pseudoatom.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol/wizard
copying modules/pymol/wizard/security.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol/wizard
copying modules/pymol/wizard/sculpting.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol/wizard
copying modules/pymol/wizard/demo.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol/wizard
copying modules/pymol/wizard/dragging.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol/wizard
copying modules/pymol/wizard/mutagenesis.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol/wizard
copying modules/pymol/wizard/__init__.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol/wizard
copying modules/pymol/wizard/cleanup.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol/wizard
copying modules/pymol/wizard/measurement.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol/wizard
copying modules/pymol/wizard/appearance.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol/wizard
copying modules/pymol/wizard/distance.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol/wizard
copying modules/pymol/wizard/density.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol/wizard
copying modules/pymol/wizard/filter.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol/wizard
copying modules/pymol/wizard/message.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol/wizard
copying modules/pymol/wizard/toggle.py -> build/lib.netbsd-6.99.15-amd64-2.7/pymol/wizard
creating build/lib.netbsd-6.99.15-amd64-2.7/web
copying modules/web/pymolhttpd.py -> build/lib.netbsd-6.99.15-amd64-2.7/web
copying modules/web/__init__.py -> build/lib.netbsd-6.99.15-amd64-2.7/web
creating build/lib.netbsd-6.99.15-amd64-2.7/web/examples
copying modules/web/examples/justhttpd.py -> build/lib.netbsd-6.99.15-amd64-2.7/web/examples
copying modules/web/examples/__init__.py -> build/lib.netbsd-6.99.15-amd64-2.7/web/examples
package init file 'modules/web/javascript/__init__.py' not found (or not a regular file)
package init file 'modules/web/javascript/__init__.py' not found (or not a regular file)
running build_ext
building 'pymol._cmd' extension
creating build/temp.netbsd-6.99.15-amd64-2.7
creating build/temp.netbsd-6.99.15-amd64-2.7/modules
creating build/temp.netbsd-6.99.15-amd64-2.7/modules/cealign
creating build/temp.netbsd-6.99.15-amd64-2.7/modules/cealign/src
creating build/temp.netbsd-6.99.15-amd64-2.7/ov
creating build/temp.netbsd-6.99.15-amd64-2.7/ov/src
creating build/temp.netbsd-6.99.15-amd64-2.7/layer0
creating build/temp.netbsd-6.99.15-amd64-2.7/layer1
creating build/temp.netbsd-6.99.15-amd64-2.7/layer2
creating build/temp.netbsd-6.99.15-amd64-2.7/layer3
creating build/temp.netbsd-6.99.15-amd64-2.7/layer4
creating build/temp.netbsd-6.99.15-amd64-2.7/layer5
gcc -DNDEBUG -O2 -fwrapv -DHAVE_DB_185_H -I/usr/include -I/usr/pkg/include -O2 -I/usr/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include -fPIC -D_PYMOL_MODULE -D_PYMOL_INLINE -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -I/usr/include/freetype2 -Imodules/cealign/src -Imodules/cealign/src/tnt -I/usr/pkg/include/python2.7 -c modules/cealign/src/ccealignmodule.cpp -o build/temp.netbsd-6.99.15-amd64-2.7/modules/cealign/src/ccealignmodule.o -ffast-math -funroll-loops -O3
In file included from modules/cealign/src/ccealignmodule.cpp:32:
In file included from modules/cealign/src/ccealignmodule.H:36:
In file included from modules/cealign/src/tnt/tnt.h:41:
modules/cealign/src/tnt/tnt_array1d.h:238:15: warning: '&&' within '||' [-Wlogical-op-parentheses]
        if ((i0 > 0) && (i1 < n_) || (i0 <= i1))
            ~~~~~~~~~^~~~~~~~~~~~ ~~
modules/cealign/src/tnt/tnt_array1d.h:238:15: note: place parentheses around the '&&' expression to silence this warning
        if ((i0 > 0) && (i1 < n_) || (i0 <= i1))
                     ^
            (                    )
In file included from modules/cealign/src/ccealignmodule.cpp:32:
In file included from modules/cealign/src/ccealignmodule.H:36:
In file included from modules/cealign/src/tnt/tnt.h:48:
modules/cealign/src/tnt/tnt_fortran_array1d.h:224:15: warning: '&&' within '||' [-Wlogical-op-parentheses]
        if ((i0 > 0) && (i1 < n_) || (i0 <= i1))
            ~~~~~~~~~^~~~~~~~~~~~ ~~
modules/cealign/src/tnt/tnt_fortran_array1d.h:224:15: note: place parentheses around the '&&' expression to silence this warning
        if ((i0 > 0) && (i1 < n_) || (i0 <= i1))
                     ^
            (                    )
In file included from modules/cealign/src/ccealignmodule.cpp:32:
In file included from modules/cealign/src/ccealignmodule.H:36:
In file included from modules/cealign/src/tnt/tnt.h:55:
modules/cealign/src/tnt/tnt_sparse_matrix_csr.h:97:3: error: no matching constructor for initialization of 'Array1D<int>'
                rowptr_(M, r), colind_(nz, c), dim1_(M), dim2_(N) {}
                ^       ~~~~
modules/cealign/src/tnt/tnt_array1d.h:63:11: note: candidate constructor not viable: no known conversion from 'const int *' to 'const int' for 2nd argument; dereference the argument with *
                 Array1D(int n, const T &a);
                 ^
modules/cealign/src/tnt/tnt_array1d.h:64:11: note: candidate constructor not viable: 2nd argument ('const int *') would lose const qualifier
                 Array1D(int n,  T *a);
                 ^
modules/cealign/src/tnt/tnt_array1d.h:61:11: note: candidate constructor not viable: requires 0 arguments, but 2 were provided
                 Array1D();
                 ^
modules/cealign/src/tnt/tnt_array1d.h:62:11: note: candidate constructor not viable: requires single argument 'n', but 2 arguments were provided
        explicit Array1D(int n);
                 ^
modules/cealign/src/tnt/tnt_array1d.h:65:14: note: candidate constructor not viable: requires single argument 'A', but 2 arguments were provided
    inline   Array1D(const Array1D &A);
             ^
In file included from modules/cealign/src/ccealignmodule.cpp:32:
In file included from modules/cealign/src/ccealignmodule.H:36:
In file included from modules/cealign/src/tnt/tnt.h:55:
modules/cealign/src/tnt/tnt_sparse_matrix_csr.h:97:18: error: no matching constructor for initialization of 'Array1D<int>'
                rowptr_(M, r), colind_(nz, c), dim1_(M), dim2_(N) {}
                               ^       ~~~~~
modules/cealign/src/tnt/tnt_array1d.h:63:11: note: candidate constructor not viable: no known conversion from 'const int *' to 'const int' for 2nd argument; dereference the argument with *
                 Array1D(int n, const T &a);
                 ^
modules/cealign/src/tnt/tnt_array1d.h:64:11: note: candidate constructor not viable: 2nd argument ('const int *') would lose const qualifier
                 Array1D(int n,  T *a);
                 ^
modules/cealign/src/tnt/tnt_array1d.h:61:11: note: candidate constructor not viable: requires 0 arguments, but 2 were provided
                 Array1D();
                 ^
modules/cealign/src/tnt/tnt_array1d.h:62:11: note: candidate constructor not viable: requires single argument 'n', but 2 arguments were provided
        explicit Array1D(int n);
                 ^
modules/cealign/src/tnt/tnt_array1d.h:65:14: note: candidate constructor not viable: requires single argument 'A', but 2 arguments were provided
    inline   Array1D(const Array1D &A);
             ^
2 warnings and 2 errors generated.
error: command 'gcc' failed with exit status 1
*** Error code 1

Stop.
make: stopped in /bulk-data/pkgsrc/biology/py-mol
*** Error code 1

Stop.
make: stopped in /bulk-data/pkgsrc/biology/py-mol
