=> Bootstrap dependency digest>=20010302: found digest-20121220
===> Skipping vulnerability checks.
WARNING: No /var/db/pkg/pkg-vulnerabilities file found.
WARNING: To fix run: `/usr/sbin/pkg_admin -K /var/db/pkg fetch-pkg-vulnerabilities'.
=> Checksum SHA1 OK for gromacs-4.5.5.tar.gz
=> Checksum RMD160 OK for gromacs-4.5.5.tar.gz
===> Installing dependencies for gromacs-4.5.5nb3
==========================================================================
The supported build options for gromacs are:

	mpi x11

The currently selected options are:

	mpi x11

You can select which build options to use by setting PKG_DEFAULT_OPTIONS
or the following variable.  Its current value is shown:

	PKG_OPTIONS.gromacs (not defined)

==========================================================================
=> Tool dependency libtool-base>=2.2.6bnb3: found libtool-base-2.4.2nb4
=> Tool dependency pkg-config>=0.25: found pkg-config-0.28
=> Tool dependency checkperms>=1.1: found checkperms-1.11
=> Build dependency kbproto>=1.0.2: found kbproto-1.0.6
=> Build dependency xproto>=7.0.9: found xproto-7.0.24nb1
=> Build dependency xcb-proto>=1.4: found xcb-proto-1.8
=> Full dependency perl>=5.0: found perl-5.18.0nb1
=> Full dependency mpich>=3: found mpich-3.0.4nb1
=> Full dependency libX11>=1.1: found libX11-1.6.0
=> Full dependency libICE>=0.99.1: found libICE-1.0.8
=> Full dependency libSM>=0.99.2: found libSM-1.2.1
=> Full dependency fftw>=3.1nb1: found fftw-3.3.3nb1
=> Full dependency gsl>=1.5nb1: found gsl-1.15
=> Full dependency libxml2>=2.8.0nb2: found libxml2-2.9.1
===> Overriding tools for gromacs-4.5.5nb3
===> Extracting for gromacs-4.5.5nb3
===> Patching for gromacs-4.5.5nb3
=> Applying pkgsrc patches for gromacs-4.5.5nb3
=> Verifying /data/pkgsrc/biology/gromacs/patches/patch-aa
=> Applying pkgsrc patch /data/pkgsrc/biology/gromacs/patches/patch-aa
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-aa,v 1.3 2013/04/01 08:00:16 sbd Exp $
|
|Allow flags to contain commas.
|
|--- share/template/Makefile.in.orig	2011-09-21 12:38:30.000000000 +0000
|+++ share/template/Makefile.in
--------------------------
Patching file share/template/Makefile.in using Plan A...
Hunk #1 succeeded at 250.
Hunk #2 succeeded at 569.
done
=> Verifying /data/pkgsrc/biology/gromacs/patches/patch-ad
=> Applying pkgsrc patch /data/pkgsrc/biology/gromacs/patches/patch-ad
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-ad,v 1.1 2010/05/16 12:04:03 asau Exp $
|
|Libtool wants tag nowadays.
|
|--- src/gmxlib/nonbonded/nb_kernel_ia32_sse2/Makefile.in.orig	2010-05-15 00:44:35.000000000 +0400
|+++ src/gmxlib/nonbonded/nb_kernel_ia32_sse2/Makefile.in	2010-05-15 00:49:20.000000000 +0400
--------------------------
Patching file src/gmxlib/nonbonded/nb_kernel_ia32_sse2/Makefile.in using Plan A...
Hunk #1 succeeded at 91 (offset 5 lines).
done
=> Verifying /data/pkgsrc/biology/gromacs/patches/patch-ae
=> Applying pkgsrc patch /data/pkgsrc/biology/gromacs/patches/patch-ae
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-ae,v 1.1 2010/06/17 09:26:16 asau Exp $
|
|Modern libtool requires tag.
|
|--- src/gmxlib/nonbonded/nb_kernel_ia32_sse/Makefile.in.orig	2009-12-06 21:18:53.000000000 +0000
|+++ src/gmxlib/nonbonded/nb_kernel_ia32_sse/Makefile.in	2010-06-17 07:55:04.000000000 +0000
--------------------------
Patching file src/gmxlib/nonbonded/nb_kernel_ia32_sse/Makefile.in using Plan A...
Hunk #1 succeeded at 91 (offset 5 lines).
done
=> Verifying /data/pkgsrc/biology/gromacs/patches/patch-ag
=> Applying pkgsrc patch /data/pkgsrc/biology/gromacs/patches/patch-ag
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-ag,v 1.2 2010/09/03 20:52:39 asau Exp $
|
|Modern libtool requires tag.
|
|--- src/gmxlib/nonbonded/nb_kernel_ia64_double/Makefile.in.orig	2010-07-30 22:55:04.000000000 +0400
|+++ src/gmxlib/nonbonded/nb_kernel_ia64_double/Makefile.in	2010-07-31 11:57:35.000000000 +0400
--------------------------
Patching file src/gmxlib/nonbonded/nb_kernel_ia64_double/Makefile.in using Plan A...
Hunk #1 succeeded at 71.
done
=> Verifying /data/pkgsrc/biology/gromacs/patches/patch-ah
=> Applying pkgsrc patch /data/pkgsrc/biology/gromacs/patches/patch-ah
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-ah,v 1.2 2010/09/03 20:52:39 asau Exp $
|
|Modern libtool requires tag.
|
|--- src/gmxlib/nonbonded/nb_kernel_ia64_single/Makefile.in.orig	2010-07-30 22:55:04.000000000 +0400
|+++ src/gmxlib/nonbonded/nb_kernel_ia64_single/Makefile.in	2010-07-31 11:58:30.000000000 +0400
--------------------------
Patching file src/gmxlib/nonbonded/nb_kernel_ia64_single/Makefile.in using Plan A...
Hunk #1 succeeded at 71.
done
=> Verifying /data/pkgsrc/biology/gromacs/patches/patch-ai
=> Applying pkgsrc patch /data/pkgsrc/biology/gromacs/patches/patch-ai
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-ai,v 1.1 2010/06/17 09:26:16 asau Exp $
|
|Modern libtool requires tag.
|
|--- src/gmxlib/nonbonded/nb_kernel_x86_64_sse/Makefile.in.orig	2009-12-06 21:18:54.000000000 +0000
|+++ src/gmxlib/nonbonded/nb_kernel_x86_64_sse/Makefile.in	2010-06-17 07:58:21.000000000 +0000
--------------------------
Patching file src/gmxlib/nonbonded/nb_kernel_x86_64_sse/Makefile.in using Plan A...
Hunk #1 succeeded at 92 (offset 6 lines).
done
=> Verifying /data/pkgsrc/biology/gromacs/patches/patch-aj
=> Applying pkgsrc patch /data/pkgsrc/biology/gromacs/patches/patch-aj
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-aj,v 1.1 2010/06/17 09:26:16 asau Exp $
|
|Modern libtool requires tag.
|
|--- src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/Makefile.in.orig	2009-12-06 21:18:54.000000000 +0000
|+++ src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/Makefile.in	2010-06-17 07:59:09.000000000 +0000
--------------------------
Patching file src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/Makefile.in using Plan A...
Hunk #1 succeeded at 91 (offset 5 lines).
done
===> Creating toolchain wrappers for gromacs-4.5.5nb3
===> Configuring for gromacs-4.5.5nb3
=> Modifying GNU configure scripts to avoid --recheck
=> Replacing config-guess with pkgsrc versions
=> Replacing config-sub with pkgsrc versions
=> Replacing install-sh with pkgsrc version
=> Replacing Perl interpreter in scripts/demux.pl scripts/xplor2gmx.pl.
=> Fixing locale directory references.
=> Checking for portability problems in extracted files
checking build system type... x86_64--netbsd
checking host system type... x86_64--netbsd
checking for a BSD-compatible install... /usr/bin/install -c -o pbulkXXX -g users
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... config/install-sh -c -d
checking for gawk... /usr/bin/awk
checking whether make sets $(MAKE)... yes
checking how to create a ustar tar archive... plaintar
checking for x86_64--netbsd-cc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of gcc... gcc3
checking dependency style of gcc... gcc3
checking for mpxlc... no
checking for mpicc... mpicc
checking whether the MPI cc command works... configure: error: Cannot compile and link MPI code with mpicc
*** Error code 1

Stop.
make: stopped in /data/pkgsrc/biology/gromacs
*** Error code 1

Stop.
make: stopped in /data/pkgsrc/biology/gromacs
