/*
* $Id$
*
*  Copyright (c) 2010, Novartis Institutes for BioMedical Research Inc.
*  All rights reserved.
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*       notice, this list of conditions and the following disclaimer.
*     * Redistributions in binary form must reproduce the above
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*       disclaimer in the documentation and/or other materials provided
*       with the distribution.
*     * Neither the name of Novartis Institutes for BioMedical Research Inc.
*       nor the names of its contributors may be used to endorse or promote
*       products derived from this software without specific prior written permission.
*
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
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*/

%{
#include <DataStructs/BitOps.h>
#include <DataStructs/ExplicitBitVect.h>
#include <DataStructs/BitVectUtils.h>
%}

%include <DataStructs/BitVect.h>
%include <DataStructs/BitOps.h>
%include <DataStructs/BitVectUtils.h>

/* Only the following are tested */
/* We expect that SWIG can figure out the overloading so we don't need to add a suffix like EBV to the name */
%template(OnBitProjSimilarity) OnBitProjSimilarity<ExplicitBitVect,ExplicitBitVect>;
%template(FoldFingerprint) FoldFingerprint<ExplicitBitVect>;

%template(AllProbeBitsMatch) AllProbeBitsMatch<ExplicitBitVect>;
%template(AllProbeBitsMatch) AllProbeBitsMatch<ExplicitBitVect>;
%template(TanimotoSimilarity) TanimotoSimilarity<ExplicitBitVect,ExplicitBitVect>;
%template(CosineSimilarity) CosineSimilarity<ExplicitBitVect,ExplicitBitVect>;
%template(KulczynskiSimilarity) KulczynskiSimilarity<ExplicitBitVect,ExplicitBitVect>;
%template(DiceSimilarity) DiceSimilarity<ExplicitBitVect,ExplicitBitVect>;
%template(TverskySimilarity) TverskySimilarity<ExplicitBitVect,ExplicitBitVect>;
%template(SokalSimilarity) SokalSimilarity<ExplicitBitVect,ExplicitBitVect>;
%template(McConnaugheySimilarity) McConnaugheySimilarity<ExplicitBitVect,ExplicitBitVect>;
%template(AsymmetricSimilarity) AsymmetricSimilarity<ExplicitBitVect,ExplicitBitVect>;
%template(BraunBlanquetSimilarity) BraunBlanquetSimilarity<ExplicitBitVect,ExplicitBitVect>;
%template(RusselSimilarity) RusselSimilarity<ExplicitBitVect,ExplicitBitVect>;
%template(OnBitSimilarity) OnBitSimilarity<ExplicitBitVect,ExplicitBitVect>;
%template(NumBitsInCommon) NumBitsInCommon<ExplicitBitVect,ExplicitBitVect>;
%template(AllBitSimilarity) AllBitSimilarity<ExplicitBitVect,ExplicitBitVect>;
%template(OnBitsInCommon) OnBitsInCommon<ExplicitBitVect,ExplicitBitVect>;
%template(OffBitsInCommon) OffBitsInCommon<ExplicitBitVect,ExplicitBitVect>;
%template(OnBitProjSimilarity) OnBitProjSimilarity<ExplicitBitVect,ExplicitBitVect>;
%template(OffBitProjSimilarity) OffBitProjSimilarity<ExplicitBitVect,ExplicitBitVect>;
%template(BitVectToText) BitVectToText<ExplicitBitVect>;
%template(FromBitString) FromBitString<ExplicitBitVect>;
%template(FromDaylightString) FromDaylightString<ExplicitBitVect>;
%template(BitVectToFPSText) BitVectToFPSText<ExplicitBitVect>;
%template(UpdateBitVectFromFPSText) UpdateBitVectFromFPSText<ExplicitBitVect>;
