vg::Recombinator Member List

This is the complete list of members for vg::Recombinator, including all inherited members.

absent enum value	vg::Recombinator
ABSENT_SCORE	vg::Recombinator	static
classify_kmers(const std::string &kff_file, const Parameters &parameters) const	vg::Recombinator
COVERAGE	vg::Recombinator	static
extract_sequences(const std::string &kff_file, size_t chain_id, size_t subchain_id, const Parameters &parameters) const	vg::Recombinator
frequent enum value	vg::Recombinator
gbz	vg::Recombinator
generate_haplotypes(const std::string &kff_file, const Parameters &parameters) const	vg::Recombinator
generate_haplotypes(const Haplotypes::TopLevelChain &chain, const hash_map< Haplotypes::Subchain::kmer_type, size_t > &kmer_counts, gbwt::GBWTBuilder &builder, gbwtgraph::MetadataBuilder &metadata, const Parameters &parameters, double coverage) const	vg::Recombinator	private
haplotypes	vg::Recombinator
HET_ADJUSTMENT	vg::Recombinator	static
heterozygous enum value	vg::Recombinator
KFF_BLOCK_SIZE	vg::Recombinator	static
kmer_presence enum name	vg::Recombinator
NUM_CANDIDATES	vg::Recombinator	static
NUM_HAPLOTYPES	vg::Recombinator	static
present enum value	vg::Recombinator
PRESENT_DISCOUNT	vg::Recombinator	static
Recombinator(const gbwtgraph::GBZ &gbz, const Haplotypes &haplotypes, Verbosity verbosity)	vg::Recombinator
sequence_type typedef	vg::Recombinator
verbosity	vg::Recombinator
Verbosity typedef	vg::Recombinator