vg::algorithms::Anchor Class Reference

#include <chain_items.hpp>

Public Member Functions
size_t	read_start () const
	Get the start position in the read of this anchor's match.
const pos_t &	graph_start () const
	Get the start position in the graph of this anchor's match.
size_t	length () const
	Get the length of this anchor's match.
int	score () const
	Get the alignment score of the anchor.
size_t	read_end () const
	Get the end position in the read of this anchor's match.
pos_t	graph_end () const
	Get the end position in the graph of this anchor's match.
	Anchor (size_t read_start, const pos_t &graph_start, size_t length, int score)
	Compose a read start position, graph start position, and match length into an Anchor.
	Anchor ()=default
	Anchor (const Anchor &other)=default
Anchor &	operator= (const Anchor &other)=default
	Anchor (Anchor &&other)=default
Anchor &	operator= (Anchor &&other)=default

Protected Attributes
size_t	start
size_t	size
pos_t	pos
int	points

Detailed Description

Represents a piece fo a graph node matching to a piece of a read. Can be chained together.

Constructor & Destructor Documentation

Anchor() [1/4]

vg::algorithms::Anchor::Anchor ( size_t  read_start, const pos_t &  graph_start, size_t  length, int  score  )

inline

Compose a read start position, graph start position, and match length into an Anchor.

Anchor() [2/4]

vg::algorithms::Anchor::Anchor ( )

default

Anchor() [3/4]

vg::algorithms::Anchor::Anchor ( const Anchor &  other )

default

Anchor() [4/4]

vg::algorithms::Anchor::Anchor ( Anchor &&  other )

default

Member Function Documentation

graph_end()

pos_t vg::algorithms::Anchor::graph_end ( ) const

inline

Get the end position in the graph of this anchor's match.

graph_start()

const pos_t & vg::algorithms::Anchor::graph_start ( ) const

inline

Get the start position in the graph of this anchor's match.

length()

size_t vg::algorithms::Anchor::length ( ) const

inline

Get the length of this anchor's match.

operator=() [1/2]

Anchor & vg::algorithms::Anchor::operator= ( Anchor &&  other )

default

operator=() [2/2]

Anchor & vg::algorithms::Anchor::operator= ( const Anchor &  other )

default

read_end()

size_t vg::algorithms::Anchor::read_end ( ) const

inline

Get the end position in the read of this anchor's match.

read_start()

size_t vg::algorithms::Anchor::read_start ( ) const

inline

Get the start position in the read of this anchor's match.

score()

int vg::algorithms::Anchor::score ( ) const

inline

Get the alignment score of the anchor.

Member Data Documentation

points

int vg::algorithms::Anchor::points

protected

pos

pos_t vg::algorithms::Anchor::pos

protected

size

size_t vg::algorithms::Anchor::size

protected

start

size_t vg::algorithms::Anchor::start

protected

---

The documentation for this class was generated from the following file:

• src/algorithms/chain_items.hpp